of viral HA and NP. Alkaline phosphatase conjugated rabbit antibodies to mouse IgG was used as a secondary antibody. Protein identification by mass spectrometry analysis Excised gel bands of interest were washed and dehydrated with acetonitrile. Proteins were reduced with 20 mM dithiothreitol and incubated at 56 C for 30 min before alkylation with 55 mM iodoacetamide 20.1 M ammonium hydrogen carbonate in the dark at room temperature for 15 minutes. After washing with 0.1 M NH4HCO3 and dehydration with ACN the gel pieces were rehydrated in 10 to 15 ml sequencing grade modified trypsin in 0.1 M NH4HCO3, to a final concentration of 0.015 mg/ml trypsin and incubated for digestion overnight at 37 C. Tryptic peptides were eluted from the gel pieces by incubating successively in 25 mM NH4HCO3 and then twice in 5% formic acid for 15 Vorapaxar biological activity minutes at room temperature each. The resulting tryptic digest peptides were desalted using Zip Tip mC-18 reverse phase columns and directly eluted with 50% ACN 20.1% trifluoroacetic acid onto MALDI target plate. A saturated matrix solution 7 / 23 Influenza A Vaccine Antigen and Narcolepsy Risk of a-cyano-4-hydroxy cinnamic acid in 33% ACN 20.1% TFA was added. MALDI-TOF analyses were carried out with UltrafleXtreme 2000 Hz instrument equipped with a SmartBeam II laser, operated in positive and reflective modes. Typically, mass spectra were acquired by accumulating spectra of 10000 laser shots and up to 30000 for MS/MS spectra. External calibration was performed for molecular assignments using a peptide calibration standard. Protein identifications were performed by combining the files originating from the same gel band) and searching against open SwissProt database. `All entries’ option was selected in taxonomy field using Matrix Science’s Mascot Daemon. FlexAnalysis v3.4 and Biotools v3.2 softwares were used to assign molecular isotopic masses to the peaks in the MS spectra and as search engine interface between mass list data transfer and the databases in Mascot server, respectively. The following parameters were set for the searches: 0.1 Da precursor tolerance and 0.5 or 1 Da MS/MS fragment tolerance for combined MS and MS/MS searches, fixed and variable modifications were considered, one trypsin missed cleavage was allowed. Isolation of lipid-protein micelles by sequential ultracentifugation Isolation of lipid-protein micelles was performed by sequential ultracentrifugation using 8 / 23 Influenza A Vaccine Antigen and Narcolepsy Risk Statistical methods The distribution of antibodies in the study groups was not normal and thus the statistical analyses were performed using OD values and antibody titers after logarithmic transformation. The groups were then compared by using unpaired ttest. Percent inhibition values caused by Pandemrix and Arepanrix H1N1 antigen suspension were compared with paired t-test after logarithmic transformation. Results Increased IgG-antibody response to H1N1 viral antigen of Pandemrix in narcolepsy We studied the IgG-antibody response to H1N1 viral antigen suspension using EIA method, and observed that children with narcolepsy PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/19683970 showed higher levels of IgG-antibodies binding to the Pandemrix H1N1 antigen suspension than did vaccinated healthy children from the general population. This difference was still evident when healthy children with HLA DQB106:02 risk allele of narcolepsy were compared to PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/19682429 the children with narcolepsy. To control for the possible hyper-reactivity of antibody respon
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