Lso compare our corpus to OntoNotes Release .right here, since it is analogously a largescale

Lso compare our corpus to OntoNotes Release .right here, since it is analogously a largescale manually created corpus project with a number of kinds of semantic and syntactic annotation .Table summarizes some criteria by which we evaluate CRAFT to other corpora.Comparison of corpora with regards to total numbers of wordstokens is summarized in Table .The complete corpus consists of , tokens, as well as the initial release contains a lot more than ,; they’re bigger than almost all goldstandard annotated corpora (for which we could find published numbers), such as GENETAG, OntoNotes, GENIA, the PennBioIE Oncology and CYP Corpora, the MedPost Corpus, and BioInfer.The only corpora larger than ours by this criterion will be the silverstandard CALBC corpus, with ,, tokens, and also the goldstandard ITI TXM PPI and TE Corpora, with ,, and ,, tokens, respectively; on the other hand, the counts of your ITI TXM corpora include all versions with the subset of documents that have been multiply annotated (independently, for IAA calculation), and, as discussed later, not all Lumicitabine Purity & Documentation sections of your component documents of these corpora had been annotated.Corpora can also be compared around the size of your documents annotated, also summarized in Table .The majority of the corpora surveyed right here are composed of relatively short documents.Amongst the shortest are those documents which are person sentences, which compose PubMed ID:http://www.ncbi.nlm.nih.gov/pubmed/21475304 the GENETAG, the ABGene Corpus, and BioInfer corpora.Bada et al.BMC Bioinformatics , www.biomedcentral.comPage ofTable Idea annotation attributes of corporacorpuscorpora total # wordstokens CRAFT Corpus , , (fullinitial release) ABGene BioInfer CALBC corpus CLEF Corpus FetchProt Corpus th ibVA Challenge Corpus GENETAG , , , ,,f# type of documents articlesdomain(s) sources of MGI annotations of mouse genesgene productsannotation idea schema(s) Open Biomedical Ontologies (CL, ChEBI, SO, PRO, GO BPCCMF, NCBITaxon), Entrez Gene natotal # notion annotations , ,, sentences , sentences , abstracts variousi, , named entities, , relationshipsg ,,proteinprotein interactions immunology clinicalcancer information protein tyrosine kinase activity clinical data entity classes, relationships UniProt, NCBITaxon, UMLSh idea sorts concept sorts, UniProt concept sorts na articles discharge summaries , sentences, , , genesproteins, , alternative lexical formsGENIA .GREC ITI TXM PPITE Corpora MedPost OntoNotes .PennBioIE OncologyCYP v.Corpora Yapex Corpusf,, abstracts abstractshuman bloodcell transcription variables E.coli gene regulation proteinprotein interactionstissue expression entity classes, process classes , entities, , events classes concept kinds, Entrez Gene, RefSeqj, ChEBI, MeSH, NCBITaxonk , , ,,, ,, , , , ( ,) , ( ,) articles, newswire documents ,, abstracts abstractsEnglish Chinese news healthcare genetics of oncologyinhibition of cytochrome P enzymes proteinprotein interactions s of WordNet senses, concept typesl na, verbsmna,BioInfer has , tokens total, and , excluding punctuation.BioInfer has , namedentity annotations and , annotations of what are termed relationships but that could a lot more effectively be conceptualized as approach or state classes and hence are incorporated here, totaling , idea annotations.h Within the CALBC corpus, NCBI Taxonomy and UMLS ideas have been respectively utilized to mark up species and disease mentions.The CLEF Corpus is composed of quite a few forms of healthcare documents whole patient records (themselves composed of narratives, imaging report, histopathology reports,.